Agenda

10 February 2026, 16:00–17:30
William-Olsson lecture hall, Geoscience building, Stockholm University

• Introduction (10 min)
  • Overview of SBDI and GBIF
  • eDNA tools and workflows in SBDI
    
    
• From raw reads to ASVs (10 min)
  • Denoising and taxonomic annotation with nf-core/ampliseq
    
    
• Data sharing and access in SBDI (10 min)
  • Metabarcoding data submission to ENA
  • Submission, discovery and download in the ASV portal
  • Processing ASV portal downloads with asvoccur
    
    
• Hands-on tutorial: Import and analyse ASV portal data with R (55 min)
  • Integrate ASV portal data with asvoccur
  • Explore biodiversity patterns across environments
    
    
• Wrap-up (5 min)
  • Key takeaways
  • Support and next steps